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| Model |
Cortex
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| Submitter |
LNI Account
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| Version |
Version 3 (2007/11/21)
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| Namespace |
urn:bml/brainml.org:med.cornell.edu/Cortex/3
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| Comments |
1) Removed cortical_protocol and transferred the contained elements to protocol in BrainML/4. 2) Removed cortical_recording_location and transferred the contained elements cytoarchitectural_area and cortical_layer to recording_location in BrainML/4.
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| View |
Structure
Vocabulary
(with IDs)
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BrainML Model: "cortex"
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This is a tabular description of the entities and fields
making up the "cortex"
data model. Regular expression notation is used to indicate
quantities -- i.e., '?' following a term means 0 or 1
occurrence, '*' means 0 or more occurrences, '+' means 1 or
more occurrences, and no following character means exactly 1
occurrence.
Fields with names in (parentheses) are attributes in the XML; all
others are subelements with text content. The term "ANY" under
'Contains:' means an element can contain any other element as
content. This description is
also available in XML format.
| This schema specifies elements for the cortical neurophysiology datamodel
used at neurodatabase.org . Most structures here build on more generic
versions in the BrainML base package. Included are:
Cortical Protocol
Cortical Recording Site
Experimental Submission | | Depends on models: Neuron, AnimalSubject, BrainMetaL, BrainML | | Index of Entities | |
| | transmitter? | controlled | Neurotransmitter used by neuron. | | receptor* | controlled | Synaptic receptor expressed by neuron. | | spontaneous_firing_hz? | integer | Spontaneous firing rate of the Neuron, in Hz. | | directed_firing? | controlled | Firing characteristics of Neuron when driven by stimulus or controlling
action. | | cell_class? | controlled | Cell type of the Neuron. | | classification_method? | controlled | Means by which Neuron's cell type was determined. |
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| | electrode_tip_diameter | measured | Diameter of electrode tip doing multi-unit recording. | | electrode_n | integer | Number of electrode channels, for multi-electrodes. | | electrode_spacing_x? | measured | Electrode spacing in X direction. | | electrode_spacing_y? | measured | Electrode spacing in Y direction. | | electrode_spacing_z? | measured | Electrode spacing in Z direction. | | description? | long text | Description of the electrode arrangement. |
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